Applications

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• B. subtilis
  • http://genoscapist.migale.inrae.fr/seb_bsubbiofilm
    Presenting data from Direct comparison of spatial transcriptional heterogeneity across diverse Bacillus subtilis biofilm communities (Dergham et al., 2023)
  • http://genoscapist.migale.inrae.fr/smgeb
    Presenting data from Greedy reduction of Bacillus subtilis genome yields emergent phenotypes of high resistance to DNA damaging agent and low evolvability (Dervyn et al., 2023)
  • http://genoscapist.migale.inrae.fr/seb_rho
    Presenting data from Termination factor Rho mediates transcriptional reprogramming of Bacillus subtilis stationary phase (Bidnenko et al., 2023)
  • http://genoscapist.migale.inrae.fr/seb
    Presenting transcriptome-based reannotation studie of Bacillus subtilis (Nicolas et al., 2012)


• S. aureus
  • http://genoscapist.migale.inrae.fr/aeb
    Presenting transcriptome-based reannotation studie of Staphylococcus aureus (Mäder et al., 2016)


• Virtual Machine running B. subtilis light dataset

Citation

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Dérozier S, Nicolas P, Mäder U, Guérin C. Genoscapist: online exploration of quantitative profiles along genomes via interactively customized graphical representations [published online ahead of print, 2021 Feb 3]. Bioinformatics. 2021; btab079. doi:10.1093/bioinformatics/btab079.

Web-tool source code: https://doi.org/10.15454/OMDLOD.

Source code

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The source code is available on a GitHub repository and placed under the GNU General Public License.

Users Mailing List

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To keep users of the application informed of new features, we’ve set up a dedicated mailing list: genoscapist-users-request@groupes.renater.fr, which you can subscribe to by clicking here.